PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00641.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 350aa    MW: 39410 Da    PI: 7.4956
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00641.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62e-52141391128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF Ptdeel+v+yL++kv+g++++l ++i+evd+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkat
  Sme2.5_00641.1_g00007.1  14 LPPGFRFYPTDEELLVQYLCRKVAGDDFSL-QIIAEVDLYKFNPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKAT 98 
                              79***************************9.89***************7777799******************************* PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+dk ++s +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  Sme2.5_00641.1_g00007.1  99 GTDKVITS-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139
                              *******9.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-659163IPR003441NAC domain
PROSITE profilePS5100560.03514163IPR003441NAC domain
PfamPF023654.0E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGVRETDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGDD FSLQIIAEVD LYKFNPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSEGRK VGIKKALVFY  120
IGKAPKGTKT NWIMHEYRLS VPTTKSGSSS RLDDWVLCRI YKKNCPVQKA CSSDMQSKEM  180
SHGSSSSSSS QFDSMLEPLP EDRYFSLPTR NFQQDDNKLN LQQPSSENFD WATWGGFNSF  240
PELTTGNQAP AQVNQTPMLV NINQNHNNNN NMNNFTEFFA NPTALNFHGE VKFEGGVDQE  300
VESSVRAQRM NSVNPGFFPE NSTGFSHASS VPDPFGIRYP TQTVNMGFSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-10511694171NAC domain-containing protein 19
4dul_A1e-10511694171NAC domain-containing protein 19
1ut7_B1e-10511694171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10511694171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10511694171NO APICAL MERISTEM PROTEIN
1ut4_A1e-10511694171NO APICAL MERISTEM PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306107.10.0JA2-like
RefseqXP_015081066.10.0PREDICTED: NAC domain-containing protein 72-like
SwissprotQ93VY31e-115NAC72_ARATH; NAC domain-containing protein 72
TrEMBLK4CH240.0K4CH24_SOLLC; Uncharacterized protein
STRINGSolyc07g063410.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31222452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-110NAC family protein